Welcome to RNApdbee, a webserver to derive secondary structures from pdb files of knotted and unknotted RNAs.
RNApdbee runs according to the following scenarios:
- in "3D → (....)" the secondary structure of RNA is derived from its tertiary structure provided in PDB file,
- in "2D → (....)" the secondary structure topology of RNA is derived from base-pair list provided in BPSEQ or CT,
In both scenarios, the resulting secondary structure encoded in dot-bracket, BPSEQ and CT is immediately released together with a graphical image (if checked).